PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00056989-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 67aa    MW: 7865.88 Da    PI: 8.0593
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00056989-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.6e-081750133
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgk 33
                      r +WT+eEd++l ++++ +G +  W+  +++ gk
  PSME_00056989-RA 17 RRAWTPEEDKILSQYIEIHGDHsVWANLPQKAGK 50
                      679*****************99999999999983 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-71248IPR009057Homeodomain-like
PROSITE profilePS500906.0051251IPR017877Myb-like domain
SuperFamilySSF466892.17E-51451IPR009057Homeodomain-like
PfamPF002491.4E-61749IPR001005SANT/Myb domain
CDDcd001670.00151960No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MGRPRRCRSS EEEVFNRRAW TPEEDKILSQ YIEIHGDHSV WANLPQKAGK SLIVIYQYCR  60
GRCDLGD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.14e-08myb domain protein 34